They do to me, Tinanam. The past perfect is a dying verb form and is useful only in limited cases where the precedence of past events would really be unclear without it. In other uses as here-- where the logical sequence of events is evident-- it is just an exercise for EFL students.
While we're on this subject, could I ask you to correct the following time sequence based off conversation between John and Jane? Conversations as follows:
Jane does not show up for work. Showing concerned, John calls Jane on the phone because he thought Jane was coming to work.
Last Wednesday Jane didn't show up for work. John thought she'd be / she was working that Wednesday. Concerned, John called Jane, and she told him that she was sorry because her little one was having trouble swallowing and she needed to stay home to take care of him. She said she would make up the work later in the week.