There are no grammar rules for choosing prepositions. Collocation and common sense are your only friends. I can't really judge your sentences because I don't know what 'glass alignment' is.
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Mister MicawberGlass Alignement is an operation for aligning glasses (to make the edges of a rectangual glass in parallel to the edges of a calibrated glass)used for creating solar cells.
I can't really judge your sentences because I don't know what 'glass aligment' is. Is it a study? A process? A specific process?