It was Cuba that created the first fracture between Kennedy and his national security chain of command. But
while the Bay of Pigs was still dominating the front pages, the CIA mucked its way into another international crisis that required the president’s urgent attention.
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com/dictionary/american/muck_2
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See the definition of "muck up"
https://www.macmillandictionary.com/dictionary/american/muck_2