And in that misconception X systems read the entire input. (which is wrong) Yes, it makes sense, but what you're trying to say is often expressed by using "namely", as follows: ... with another misconception, namely, that X systems read the entire input.
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Pasq"This particular case contrasts with another misconception, in which X systems tend to read the entire input."When I say in which, I am referring to the misconception.And in that misconception X systems read the entire input. (which is wrong)Yes, it makes sense, but what you're trying to say is often expressed by using "namely", as follows:
PasqIn this case, namely stands for "specifically" or "in that case"?Right. You may substitute "specifically" there, but not "in that case".