Hi, Yes, you need to omit the second " in" and modify it as follows I thought he was in a worse condition than he had ever been. I thought he wasn't going to make it. Hamid
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AnonymousI thought he was in a worse condition than he was in. I thought he wasn't going to make it.It's not particularly elegant, but it sounds OK to me, at least in conversation. The 'was' that I have underlined would be stressed. In writing, I'd probably add 'actually' before that 'was'.
hrsaneiI thought he was in a worse condition than he had ever been.That has a different meaning from the original. It needs the 'in' at the end, in my opinion.