The antecedent of that is processes .
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soheil1So why did you said that the antecedent is 'processes'?Because it is. What I did not say, however, is that "the that-clause always modifies the nearest noun". In this case, the relative clause does describe the noun processes.
Aspara GusThe discussion surrounding the newly[?] desired capabilities of a new application can lead to a reassessment of current processes, workflow, and a distribution of tasks across staff and a decision to make changes in processes that extend well beyond the computer system.